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Three things the one-folder-per-study layout ran into. **Discovery walks down.** A plain directory is now walked all the way, so `fluksio sync dev` finds `dev/s1_baseline/study.py` and naming each study is no longer the price of the layout. Hidden directories, `__pycache__`, `node_modules` and virtualenvs are left alone, and a package is taken whole. Two files that would import under one module name are refused, naming both: Python keeps one module per name, so the second would silently *be* the first — and a node's generated body imports by that name, so a worker would run the wrong study's code. The message says the fix, which is an `__init__.py` per study directory. A module that raises while importing is now a sentence naming the file rather than an importlib traceback. **`run` and `sweep` sync downwards too**, so the flow is found from the repository root without the sync-then-`--no-sync` two-step. A study that will not import is a warning rather than a stopped run, since a walk meets every study and a half-finished one two directories away is not this run's problem. The upload was already a no-op for a flow nothing changed in, so what the walk costs is import time — `--sync PATH` narrows it, and skipping unchanged subtrees would need a cache keyed on file state that is deliberately not here. **`serve` moves off a busy default port** — 8001, 8002, up to twenty — says which it took, and writes that one into `client.json`. A port given with `--port` still fails when it is taken, because naming one is asking for it. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01A9Hdrmf2cwNABCnE5x9UJa